Package: PVR 0.3
PVR: Phylogenetic Eigenvectors Regression and Phylogentic Signal-Representation Curve
Estimates (and controls for) phylogenetic signal through phylogenetic eigenvectors regression (PVR) and phylogenetic signal-representation (PSR) curve, along with some plot utilities.
Authors:
PVR_0.3.tar.gz
PVR_0.3.zip(r-4.5)PVR_0.3.zip(r-4.4)PVR_0.3.zip(r-4.3)
PVR_0.3.tgz(r-4.4-any)PVR_0.3.tgz(r-4.3-any)
PVR_0.3.tar.gz(r-4.5-noble)PVR_0.3.tar.gz(r-4.4-noble)
PVR_0.3.tgz(r-4.4-emscripten)PVR_0.3.tgz(r-4.3-emscripten)
PVR.pdf |PVR.html✨
PVR/json (API)
| # Install 'PVR' in R: |
| install.packages('PVR', repos = c('https://santostbio.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 years agofrom:2c00e7db9e. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 25 2024 |
| R-4.5-win | OK | Oct 25 2024 |
| R-4.5-linux | OK | Oct 25 2024 |
| R-4.4-win | OK | Oct 25 2024 |
| R-4.4-mac | OK | Oct 25 2024 |
| R-4.3-win | OK | Oct 25 2024 |
| R-4.3-mac | OK | Oct 25 2024 |
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Computes *P*hylogenetic eigen*V*ectors *R*egression and *P*hylogentic *S*ignal-*R*epresentation curve (with null and neutral expectations). | PVR-package |
| Creates a phylogenetic signal-representation (PSR) curve for a given phylogeny and trait set and computes its area. | PSR |
| Class '"PSR"' | plot,PSR-method PSR-class show,PSR-method |
| Plot function for objects of class PSR | PSRplot |
| Phylogenetic eigenvectors regression. | PVR |
| Class '"PVR"' | PVR-class show,PVR-method |
| Phylogenetic distances matrix (eigen)decomposition. | PVRdecomp |
| Plot function for objects of class PVR to show variation partition components. | VarPartplot |
